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chatmol/molecule-mcp

chatmol/molecule-mcp

@ChatMol

A model-context-protocol server for molecules, connecting molecular science tools to Claude AI for prompt-assisted molecular modeling.

moleculesciencechemistrymcpclaudeairesearchbiotechtool

Installation & Configuration

{
  "mcpServers": {
    "pymol": {
      "command": "/path/to/mcp",
      "args": [
        "run",
        "/path/to/molecule-mcp/pymol_server.py"
      ]
    },
    "chimerax": {
      "command": "/path/to/mcp",
      "args": [
        "run",
        "/path/to/molecule-mcp/ChimeraX_server.py"
      ]
    },
    "gromacs_copilot": {
      "command": "/path/to/mcp",
      "args": [
        "run",
        "/path/to/molecule-mcp/mcp_server.py"
      ]
    }
  }
}

Information

Transport
stdio
Language
Python
Created
2026/6/13
Updated
2026/6/13